adjR2()

Compute McNemar's adjusted R2 
amplifyTrans()

Write out mediatorbased transeSNP effects 
computeTME()

Compute total mediation effect 
CVFitMediator()

Fit a single split in crossvalidation for a given biomarker 
estimateHeritability()

Estimate germline heritability of a biomarker 
gatherMediators()

Extract mediating biomarkers for a given gene 
getCisGenotypes()

Gather the cisgenotypes for a given biomarker 
LDprune()

LD prune a genotype matrix 
permuteTME()

Perform permutation test for the total mediation effect 
RepParallel()

Parallel implementation of replicate() 
sobelTest()

Compute total mediation effect 
testTME()

Run TME tests through a data.frame of mediators 
trainMediator()

Train and predict mediator predictive model 
trainSNPPheno()

Train a localonly model for a phenotype 
trainLocalModel()

Train a localonly model for a phenotype 
trainDeP()

Train and predict gene's predictive model with mediators using DePMA 
trainExpression()

Train and predict gene's predictive model with mediators using MeTWAS 