Select the compartment specific genes

The function feature selects the compartment specific genes from the reference expression matrix

findInformSet(
  yref,
  method = c("variance", "linearity"),
  n_genes = 1000,
  n.types = NULL,
  scree = "cumvar"
)

Arguments

yref

matrix, numeric expression matrix
method

character, variance/linearity for TOAST or LINSEED
n_genes

integer, number of CTS genes needed
n.types

integer, number of compartments
scree

character, method to estimate n.types

Value

numeric matrix of n_genes CTS genes