Find errors in estimated proportion matrix and signature

The function finds the error in a DeCompress-esimated proportion and signature matrix using either known cell-type proportions or the total gene expression matrix

calculateError(estProp, estSig, trueProp = NULL, yref)

Arguments

estProp	matrix, numeric expression matrix of compartment proportions
estSig	matrix, numeric matrix of compartment gene signatures
trueProp	matrix, known proportion matrix, NULL if not known
yref	matrix, numeric matrix of original expression matrix

Value

reconstruction MSE